// Copyright (c) 2017, the R8 project authors. Please see the AUTHORS file
// for details. All rights reserved. Use of this source code is governed by a
// BSD-style license that can be found in the LICENSE file.
package com.android.tools.r8.shaking;

import com.android.tools.r8.errors.CompilationError;
import com.android.tools.r8.graph.DexAnnotationSet;
import com.android.tools.r8.graph.DexApplication;
import com.android.tools.r8.graph.DexClass;
import com.android.tools.r8.graph.DexEncodedField;
import com.android.tools.r8.graph.DexEncodedMethod;
import com.android.tools.r8.graph.DexField;
import com.android.tools.r8.graph.DexMethod;
import com.android.tools.r8.graph.DexProgramClass;
import com.android.tools.r8.graph.DexProto;
import com.android.tools.r8.graph.DexString;
import com.android.tools.r8.graph.DexType;
import com.android.tools.r8.graph.DexTypeList;
import com.android.tools.r8.graph.GraphLense;
import com.android.tools.r8.graph.GraphLense.Builder;
import com.android.tools.r8.graph.KeyedDexItem;
import com.android.tools.r8.graph.MethodAccessFlags;
import com.android.tools.r8.graph.ParameterAnnotationsList;
import com.android.tools.r8.graph.PresortedComparable;
import com.android.tools.r8.ir.code.Invoke.Type;
import com.android.tools.r8.ir.synthetic.ForwardMethodSourceCode;
import com.android.tools.r8.ir.synthetic.SynthesizedCode;
import com.android.tools.r8.logging.Log;
import com.android.tools.r8.optimize.InvokeSingleTargetExtractor;
import com.android.tools.r8.shaking.Enqueuer.AppInfoWithLiveness;
import com.android.tools.r8.utils.FieldSignatureEquivalence;
import com.android.tools.r8.utils.MethodSignatureEquivalence;
import com.android.tools.r8.utils.Timing;
import com.google.common.base.Equivalence;
import com.google.common.base.Equivalence.Wrapper;
import com.google.common.collect.Iterators;
import it.unimi.dsi.fastutil.ints.Int2IntMap;
import it.unimi.dsi.fastutil.ints.Int2IntOpenHashMap;
import it.unimi.dsi.fastutil.objects.Reference2IntMap;
import it.unimi.dsi.fastutil.objects.Reference2IntOpenHashMap;
import java.util.ArrayDeque;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.Deque;
import java.util.HashMap;
import java.util.HashSet;
import java.util.IdentityHashMap;
import java.util.Iterator;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.function.BiFunction;
import java.util.stream.Collectors;

/**
 * Merges Supertypes with a single implementation into their single subtype.
 *
 * <p>A common use-case for this is to merge an interface into its single implementation.
 *
 * <p>The class merger only fixes the structure of the graph but leaves the actual instructions
 * untouched. Fixup of instructions is deferred via a {@link GraphLense} to the IR building phase.
 */
public class VerticalClassMerger {

  private final DexApplication application;
  private final AppInfoWithLiveness appInfo;
  private final GraphLense graphLense;
  private final Map<DexType, DexType> mergedClasses = new IdentityHashMap<>();
  private final Timing timing;
  private Collection<DexMethod> invokes;

  public VerticalClassMerger(
      DexApplication application,
      AppInfoWithLiveness appInfo,
      GraphLense graphLense,
      Timing timing) {
    this.application = application;
    this.appInfo = appInfo;
    this.graphLense = graphLense;
    this.timing = timing;
  }

  // Returns a set of types that must not be merged into other types.
  private Set<DexType> getPinnedTypes(Iterable<DexProgramClass> classes) {
    // TODO(christofferqa): Compute types from [classes] that must be pinned in order for vertical
    // class merging to work.
    return new HashSet<>();
  }

  private boolean isMergeCandidate(DexProgramClass clazz, Set<DexType> pinnedTypes) {
    // We can merge program classes if they are not instantiated, have a single subtype
    // and we do not have to keep them.
    return !clazz.isLibraryClass()
        && !appInfo.instantiatedTypes.contains(clazz.type)
        && !appInfo.isPinned(clazz.type)
        && !pinnedTypes.contains(clazz.type)
        && clazz.type.getSingleSubtype() != null;
  }

  private void addProgramMethods(Set<Wrapper<DexMethod>> set, DexMethod method,
      Equivalence<DexMethod> equivalence) {
    DexClass definition = appInfo.definitionFor(method.holder);
    if (definition != null && definition.isProgramClass()) {
      set.add(equivalence.wrap(method));
    }
  }

  private Collection<DexMethod> getInvokes() {
    if (invokes == null) {
      // Collect all reachable methods that are not within a library class. Those defined on
      // library classes are known not to have program classes in their signature.
      // Also filter methods that only use types from library classes in their signatures. We
      // know that those won't conflict.
      Set<Wrapper<DexMethod>> filteredInvokes = new HashSet<>();
      Equivalence<DexMethod> equivalence = MethodSignatureEquivalence.get();
      appInfo.targetedMethods.forEach(m -> addProgramMethods(filteredInvokes, m, equivalence));
      invokes = filteredInvokes.stream().map(Wrapper::get).filter(this::removeNonProgram)
          .collect(Collectors.toList());
    }
    return invokes;
  }

  private boolean isProgramClass(DexType type) {
    if (type.isArrayType()) {
      type = type.toBaseType(appInfo.dexItemFactory);
    }
    if (type.isClassType()) {
      DexClass clazz = appInfo.definitionFor(type);
      if (clazz != null && clazz.isProgramClass()) {
        return true;
      }
    }
    return false;
  }

  private boolean removeNonProgram(DexMethod dexMethod) {
    for (DexType type : dexMethod.proto.parameters.values) {
      if (isProgramClass(type)) {
        return true;
      }
    }
    return isProgramClass(dexMethod.proto.returnType);
  }

  public GraphLense run() {
    timing.begin("merge");
    GraphLense mergingGraphLense = mergeClasses(graphLense);
    timing.end();
    timing.begin("fixup");
    GraphLense result = new TreeFixer().fixupTypeReferences(mergingGraphLense);
    timing.end();
    return result;
  }

  private void addAncestorsToWorklist(
      DexProgramClass clazz, Deque<DexProgramClass> worklist, Set<DexProgramClass> seenBefore) {
    if (seenBefore.contains(clazz)) {
      return;
    }

    worklist.addFirst(clazz);

    // Add super classes to worklist.
    if (clazz.superType != null) {
      DexClass definition = appInfo.definitionFor(clazz.superType);
      if (definition != null && definition.isProgramClass()) {
        addAncestorsToWorklist(definition.asProgramClass(), worklist, seenBefore);
      }
    }

    // Add super interfaces to worklist.
    for (DexType interfaceType : clazz.interfaces.values) {
      DexClass definition = appInfo.definitionFor(interfaceType);
      if (definition != null && definition.isProgramClass()) {
        addAncestorsToWorklist(definition.asProgramClass(), worklist, seenBefore);
      }
    }
  }

  private GraphLense mergeClasses(GraphLense graphLense) {
    Iterable<DexProgramClass> classes = application.classesWithDeterministicOrder();
    Deque<DexProgramClass> worklist = new ArrayDeque<>();
    Set<DexProgramClass> seenBefore = new HashSet<>();

    int numberOfMerges = 0;

    // Types that are pinned (in addition to those where appInfo.isPinned returns true).
    Set<DexType> pinnedTypes = getPinnedTypes(classes);

    // The resulting graph lense that should be used after class merging.
    VerticalClassMergerGraphLense.Builder renamedMembersLense =
        new VerticalClassMergerGraphLense.Builder();

    Iterator<DexProgramClass> classIterator = classes.iterator();

    // Visit the program classes in a top-down order according to the class hierarchy.
    while (classIterator.hasNext() || !worklist.isEmpty()) {
      if (worklist.isEmpty()) {
        // Add the ancestors of this class (including the class itself) to the worklist in such a
        // way that all super types of the class come before the class itself.
        addAncestorsToWorklist(classIterator.next(), worklist, seenBefore);
        if (worklist.isEmpty()) {
          continue;
        }
      }

      DexProgramClass clazz = worklist.removeFirst();
      if (!seenBefore.add(clazz) || !isMergeCandidate(clazz, pinnedTypes)) {
        continue;
      }

      DexClass targetClass = appInfo.definitionFor(clazz.type.getSingleSubtype());
      assert !mergedClasses.containsKey(targetClass.type);
      if (appInfo.isPinned(targetClass.type)) {
        // We have to keep the target class intact, so we cannot merge it.
        continue;
      }
      if (clazz.hasClassInitializer() && targetClass.hasClassInitializer()) {
        // TODO(herhut): Handle class initializers.
        if (Log.ENABLED) {
          Log.info(
              getClass(),
              "Cannot merge %s into %s due to static initializers.",
              clazz.toSourceString(),
              targetClass.toSourceString());
        }
        continue;
      }
      // Guard against the case where we have two methods that may get the same signature
      // if we replace types. This is rare, so we approximate and err on the safe side here.
      if (new CollisionDetector(clazz.type, targetClass.type, getInvokes(), mergedClasses)
          .mayCollide()) {
        if (Log.ENABLED) {
          Log.info(
              getClass(),
              "Cannot merge %s into %s due to conflict.",
              clazz.toSourceString(),
              targetClass.toSourceString());
        }
        continue;
      }
      ClassMerger merger = new ClassMerger(clazz, targetClass);
      boolean merged = merger.merge();
      if (merged) {
        // Commit the changes to the graph lense.
        renamedMembersLense.merge(merger.getRenamings());
        // Do not allow merging the resulting class into its subclass.
        // TODO(christofferqa): Get rid of this limitation.
        pinnedTypes.add(targetClass.type);
      }
      if (Log.ENABLED) {
        if (merged) {
          numberOfMerges++;
          Log.info(
              getClass(),
              "Merged class %s into %s.",
              clazz.toSourceString(),
              targetClass.toSourceString());
        } else {
          Log.info(
              getClass(),
              "Aborted merge for class %s into %s.",
              clazz.toSourceString(),
              targetClass.toSourceString());
        }
      }
    }
    if (Log.ENABLED) {
      Log.debug(getClass(), "Merged %d classes.", numberOfMerges);
    }
    return renamedMembersLense.build(graphLense);
  }

  private class ClassMerger {

    private static final String CONSTRUCTOR_NAME = "constructor";

    private final DexClass source;
    private final DexClass target;
    private final VerticalClassMergerGraphLense.Builder deferredRenamings =
        new VerticalClassMergerGraphLense.Builder();
    private boolean abortMerge = false;

    private ClassMerger(DexClass source, DexClass target) {
      this.source = source;
      this.target = target;
    }

    public boolean merge() {
      if (source.getEnclosingMethod() != null || !source.getInnerClasses().isEmpty()
          || target.getEnclosingMethod() != null || !target.getInnerClasses().isEmpty()) {
        // TODO(herhut): Consider supporting merging of inner-class attributes.
        return false;
      }
      // Merge the class [clazz] into [targetClass] by adding all methods to
      // targetClass that are not currently contained.
      // Step 1: Merge methods
      Set<Wrapper<DexMethod>> existingMethods = new HashSet<>();
      addAll(existingMethods, target.directMethods(), MethodSignatureEquivalence.get());
      addAll(existingMethods, target.virtualMethods(), MethodSignatureEquivalence.get());

      List<DexEncodedMethod> directMethods = new ArrayList<>();
      for (DexEncodedMethod directMethod : source.directMethods()) {
        if (directMethod.isInstanceInitializer()) {
          directMethods.add(renameConstructor(directMethod));
        } else {
          directMethods.add(directMethod);
        }
      }

      List<DexEncodedMethod> virtualMethods = new ArrayList<>();
      for (DexEncodedMethod virtualMethod : source.virtualMethods()) {
        DexEncodedMethod shadowedBy = findMethodInTarget(virtualMethod);
        if (shadowedBy != null) {
          if (virtualMethod.accessFlags.isAbstract()) {
            // Remove abstract/interface methods that are shadowed.
            deferredRenamings.map(virtualMethod.method, shadowedBy.method);
            continue;
          }
        } else {
          // The method is shadowed. If it is abstract, we can simply move it to the subclass.
          // Non-abstract methods are handled below (they cannot simply be moved to the subclass as
          // a virtual method, because they might be the target of an invoke-super instruction).
          if (virtualMethod.accessFlags.isAbstract()) {
            DexEncodedMethod resultingVirtualMethod =
                renameMethod(virtualMethod, target.type, false);
            deferredRenamings.map(virtualMethod.method, resultingVirtualMethod.method);
            virtualMethods.add(resultingVirtualMethod);
            continue;
          }
        }

        // This virtual method could be called directly from a sub class via an invoke-super
        // instruction. Therefore, we translate this virtual method into a direct method, such that
        // relevant invoke-super instructions can be rewritten into invoke-direct instructions.
        DexEncodedMethod resultingDirectMethod = renameMethod(virtualMethod, target.type, true);
        makePrivate(resultingDirectMethod);
        directMethods.add(resultingDirectMethod);

        // Record that invoke-super instructions in the target class should be redirected to the
        // newly created direct method.
        deferredRenamings.mapVirtualMethodToDirectInType(
            virtualMethod.method, resultingDirectMethod.method, target.type);

        if (shadowedBy == null) {
          // In addition to the newly added direct method, create a virtual method such that we do
          // not accidentally remove the method from the interface of this class.
          // Note that this method is added independently of whether it will actually be used. If
          // it turns out that the method is never used, it will be removed by the final round
          // of tree shaking.
          shadowedBy = buildBridgeMethod(virtualMethod, resultingDirectMethod.method);
          virtualMethods.add(shadowedBy);
        }

        deferredRenamings.map(virtualMethod.method, shadowedBy.method);
      }

      Collection<DexEncodedMethod> mergedDirectMethods =
          mergeItems(
              directMethods.iterator(),
              target.directMethods(),
              MethodSignatureEquivalence.get(),
              existingMethods,
              (existing, method) -> {
                DexEncodedMethod renamedMethod = renameMethod(method, target.type, true);
                deferredRenamings.map(method.method, renamedMethod.method);
                return renamedMethod;
              });
      Collection<DexEncodedMethod> mergedVirtualMethods =
          mergeItems(
              virtualMethods.iterator(),
              target.virtualMethods(),
              MethodSignatureEquivalence.get(),
              existingMethods,
              this::abortOnNonAbstract);
      if (abortMerge) {
        return false;
      }
      // Step 2: Merge fields
      Set<Wrapper<DexField>> existingFields = new HashSet<>();
      addAll(existingFields, target.instanceFields(), FieldSignatureEquivalence.get());
      addAll(existingFields, target.staticFields(), FieldSignatureEquivalence.get());
      Collection<DexEncodedField> mergedStaticFields = mergeItems(
          Iterators.forArray(source.staticFields()),
          target.staticFields(),
          FieldSignatureEquivalence.get(),
          existingFields,
          this::renameField);
      Collection<DexEncodedField> mergedInstanceFields = mergeItems(
          Iterators.forArray(source.instanceFields()),
          target.instanceFields(),
          FieldSignatureEquivalence.get(),
          existingFields,
          this::renameField);
      // Step 3: Merge interfaces
      Set<DexType> interfaces = mergeArrays(target.interfaces.values, source.interfaces.values);
      // Now destructively update the class.
      // Step 1: Update supertype or fix interfaces.
      if (source.isInterface()) {
        interfaces.remove(source.type);
      } else {
        assert !target.isInterface();
        target.superType = source.superType;
      }
      target.interfaces = interfaces.isEmpty()
          ? DexTypeList.empty()
          : new DexTypeList(interfaces.toArray(new DexType[interfaces.size()]));
      // Step 2: replace fields and methods.
      target.setDirectMethods(mergedDirectMethods
          .toArray(new DexEncodedMethod[mergedDirectMethods.size()]));
      target.setVirtualMethods(mergedVirtualMethods
          .toArray(new DexEncodedMethod[mergedVirtualMethods.size()]));
      target.setStaticFields(mergedStaticFields
          .toArray(new DexEncodedField[mergedStaticFields.size()]));
      target.setInstanceFields(mergedInstanceFields
          .toArray(new DexEncodedField[mergedInstanceFields.size()]));
      // Step 3: Unlink old class to ease tree shaking.
      source.superType = application.dexItemFactory.objectType;
      source.setDirectMethods(null);
      source.setVirtualMethods(null);
      source.setInstanceFields(null);
      source.setStaticFields(null);
      source.interfaces = DexTypeList.empty();
      // Step 4: Record merging.
      mergedClasses.put(source.type, target.type);
      return true;
    }

    public VerticalClassMergerGraphLense.Builder getRenamings() {
      return deferredRenamings;
    }

    private DexEncodedMethod buildBridgeMethod(
        DexEncodedMethod signature, DexMethod invocationTarget) {
      DexType holder = target.type;
      DexProto proto = invocationTarget.proto;
      DexString name = signature.method.name;
      MethodAccessFlags accessFlags = signature.accessFlags.copy();
      accessFlags.setBridge();
      accessFlags.setSynthetic();
      accessFlags.unsetAbstract();
      return new DexEncodedMethod(
          application.dexItemFactory.createMethod(holder, proto, name),
          accessFlags,
          DexAnnotationSet.empty(),
          ParameterAnnotationsList.empty(),
          new SynthesizedCode(
              new ForwardMethodSourceCode(holder, proto, holder, invocationTarget, Type.DIRECT),
              registry -> registry.registerInvokeDirect(invocationTarget)));
    }

    // Returns the method that shadows the given method, or null if method is not shadowed.
    private DexEncodedMethod findMethodInTarget(DexEncodedMethod method) {
      DexEncodedMethod actual = appInfo.resolveMethod(target.type, method.method).asSingleTarget();
      if (actual == null) {
        // May happen in case of missing classes.
        abortMerge = true;
        return null;
      }
      if (actual != method) {
        return actual;
      }
      // We will keep the method, so the class better be abstract if there is no implementation.
      assert !method.accessFlags.isAbstract() || target.accessFlags.isAbstract();
      return null;
    }

    private <T extends KeyedDexItem<S>, S extends PresortedComparable<S>> void addAll(
        Collection<Wrapper<S>> collection, T[] items, Equivalence<S> equivalence) {
      for (T item : items) {
        collection.add(equivalence.wrap(item.getKey()));
      }
    }

    private <T> Set<T> mergeArrays(T[] one, T[] other) {
      Set<T> merged = new LinkedHashSet<>();
      Collections.addAll(merged, one);
      Collections.addAll(merged, other);
      return merged;
    }

    private <T extends PresortedComparable<T>, S extends KeyedDexItem<T>> Collection<S> mergeItems(
        Iterator<S> fromItems,
        S[] toItems,
        Equivalence<T> equivalence,
        Set<Wrapper<T>> existing,
        BiFunction<S, S, S> onConflict) {
      HashMap<Wrapper<T>, S> methods = new HashMap<>();
      // First add everything from the target class. These items are not preprocessed.
      for (S item : toItems) {
        methods.put(equivalence.wrap(item.getKey()), item);
      }
      // Now add the new methods, resolving shadowing.
      addNonShadowed(fromItems, methods, equivalence, existing, onConflict);
      return methods.values();
    }

    private <T extends PresortedComparable<T>, S extends KeyedDexItem<T>> void addNonShadowed(
        Iterator<S> items,
        HashMap<Wrapper<T>, S> map,
        Equivalence<T> equivalence,
        Set<Wrapper<T>> existing,
        BiFunction<S, S, S> onConflict) {
      while (items.hasNext()) {
        S item = items.next();
        if (item == null) {
          // This item was filtered out by a preprocessing.
          continue;
        }
        Wrapper<T> wrapped = equivalence.wrap(item.getKey());
        if (existing.contains(wrapped)) {
          S resolved = onConflict.apply(map.get(wrapped), item);
          wrapped = equivalence.wrap(resolved.getKey());
          map.put(wrapped, resolved);
        } else {
          map.put(wrapped, item);
        }
      }
    }

    // Note that names returned by this function are not necessarily unique. However, class merging
    // is aborted if it turns out that the returned name is not unique.
    // TODO(christofferqa): Write a test that checks that class merging is aborted if this function
    // generates a name that is not unique.
    private DexString getFreshName(String nameString, DexType holder) {
      String freshName = nameString + "$" + holder.toSourceString().replace('.', '$');
      return application.dexItemFactory.createString(freshName);
    }

    private DexEncodedMethod abortOnNonAbstract(DexEncodedMethod existing,
        DexEncodedMethod method) {
      // Ignore if we override a bridge method that would bridge to the superclasses method.
      if (existing != null && existing.accessFlags.isBridge()) {
        InvokeSingleTargetExtractor extractor = new InvokeSingleTargetExtractor();
        existing.getCode().registerCodeReferences(extractor);
        if (extractor.getTarget() == method.method) {
          return method;
        }
      }

      // Abstract shadowed methods are removed prior to calling mergeItems.
      assert !method.accessFlags.isAbstract();

      // If [existing] is null, there is a conflict between a static and virtual method. Otherwise,
      // there is a non-abstract method that is shadowed. We translate virtual shadowed methods into
      // direct methods with a fresh name, so this situation should never happen. We currently get
      // in this situation if getFreshName returns a name that is not unique, though.
      abortMerge = true;
      return method;
    }

    private DexEncodedMethod renameConstructor(DexEncodedMethod method) {
      assert method.isInstanceInitializer();
      DexType holder = method.method.holder;
      DexEncodedMethod result =
          method.toRenamedMethod(
              getFreshName(CONSTRUCTOR_NAME, holder), application.dexItemFactory);
      result.markForceInline();
      deferredRenamings.map(method.method, result.method);
      // Renamed constructors turn into ordinary private functions. They can be private, as
      // they are only references from their direct subclass, which they were merged into.
      result.accessFlags.unsetConstructor();
      makePrivate(result);
      return result;
    }

    private DexEncodedMethod renameMethod(
        DexEncodedMethod method, DexType newHolder, boolean useFreshName) {
      // We cannot handle renaming static initializers yet and constructors should have been
      // renamed already.
      assert !method.accessFlags.isConstructor();
      DexType oldHolder = method.method.holder;
      DexString oldName = method.method.name;
      DexString newName =
          useFreshName ? getFreshName(oldName.toSourceString(), oldHolder) : oldName;
      DexMethod newSignature =
          application.dexItemFactory.createMethod(newHolder, method.method.proto, newName);
      return method.toTypeSubstitutedMethod(newSignature);
    }

    private DexEncodedField renameField(DexEncodedField existing, DexEncodedField field) {
      DexString oldName = field.field.name;
      DexType holder = field.field.clazz;
      DexEncodedField result =
          field.toRenamedField(
              getFreshName(oldName.toSourceString(), holder), application.dexItemFactory);
      deferredRenamings.map(field.field, result.field);
      return result;
    }
  }

  private static void makePrivate(DexEncodedMethod method) {
    assert !method.accessFlags.isAbstract();
    method.accessFlags.unsetPublic();
    method.accessFlags.unsetProtected();
    method.accessFlags.setPrivate();
  }

  private class TreeFixer {

    private final Builder lense = GraphLense.builder();
    Map<DexProto, DexProto> protoFixupCache = new IdentityHashMap<>();

    private GraphLense fixupTypeReferences(GraphLense graphLense) {
      // Globally substitute merged class types in protos and holders.
      for (DexProgramClass clazz : appInfo.classes()) {
        clazz.setDirectMethods(substituteTypesIn(clazz.directMethods()));
        clazz.setVirtualMethods(substituteTypesIn(clazz.virtualMethods()));
        clazz.setVirtualMethods(removeDupes(clazz.virtualMethods()));
        clazz.setStaticFields(substituteTypesIn(clazz.staticFields()));
        clazz.setInstanceFields(substituteTypesIn(clazz.instanceFields()));
      }
      // Record type renamings so instanceof and checkcast checks are also fixed.
      for (DexType type : mergedClasses.keySet()) {
        DexType fixed = fixupType(type);
        lense.map(type, fixed);
      }
      return lense.build(application.dexItemFactory, graphLense);
    }

    private DexEncodedMethod[] removeDupes(DexEncodedMethod[] methods) {
      if (methods == null) {
        return null;
      }
      Map<DexMethod, DexEncodedMethod> filtered = new IdentityHashMap<>();
      for (DexEncodedMethod method : methods) {
        DexEncodedMethod previous = filtered.put(method.method, method);
        if (previous != null) {
          if (!previous.accessFlags.isBridge()) {
            if (!method.accessFlags.isBridge()) {
              throw new CompilationError(
                  "Class merging produced invalid result on: " + previous.toSourceString());
            } else {
              filtered.put(previous.method, previous);
            }
          }
        }
      }
      if (filtered.size() == methods.length) {
        return methods;
      }
      return filtered.values().toArray(new DexEncodedMethod[filtered.size()]);
    }

    private DexEncodedMethod[] substituteTypesIn(DexEncodedMethod[] methods) {
      if (methods == null) {
        return null;
      }
      for (int i = 0; i < methods.length; i++) {
        DexEncodedMethod encodedMethod = methods[i];
        DexMethod method = encodedMethod.method;
        DexProto newProto = getUpdatedProto(method.proto);
        DexType newHolder = fixupType(method.holder);
        DexMethod newMethod = application.dexItemFactory.createMethod(newHolder, newProto,
            method.name);
        if (newMethod != encodedMethod.method) {
          lense.map(encodedMethod.method, newMethod);
          methods[i] = encodedMethod.toTypeSubstitutedMethod(newMethod);
        }
      }
      return methods;
    }

    private DexEncodedField[] substituteTypesIn(DexEncodedField[] fields) {
      if (fields == null) {
        return null;
      }
      for (int i = 0; i < fields.length; i++) {
        DexEncodedField encodedField = fields[i];
        DexField field = encodedField.field;
        DexType newType = fixupType(field.type);
        DexType newHolder = fixupType(field.clazz);
        DexField newField = application.dexItemFactory.createField(newHolder, newType, field.name);
        if (newField != encodedField.field) {
          lense.map(encodedField.field, newField);
          fields[i] = encodedField.toTypeSubstitutedField(newField);
        }
      }
      return fields;
    }

    private DexProto getUpdatedProto(DexProto proto) {
      DexProto result = protoFixupCache.get(proto);
      if (result == null) {
        DexType returnType = fixupType(proto.returnType);
        DexType[] arguments = fixupTypes(proto.parameters.values);
        result = application.dexItemFactory.createProto(returnType, arguments);
        protoFixupCache.put(proto, result);
      }
      return result;
    }

    private DexType fixupType(DexType type) {
      if (type.isArrayType()) {
        DexType base = type.toBaseType(application.dexItemFactory);
        DexType fixed = fixupType(base);
        if (base == fixed) {
          return type;
        } else {
          return type.replaceBaseType(fixed, application.dexItemFactory);
        }
      }
      while (mergedClasses.containsKey(type)) {
        type = mergedClasses.get(type);
      }
      return type;
    }

    private DexType[] fixupTypes(DexType[] types) {
      DexType[] result = new DexType[types.length];
      for (int i = 0; i < result.length; i++) {
        result[i] = fixupType(types[i]);
      }
      return result;
    }
  }

  private static class CollisionDetector {

    private static final int NOT_FOUND = 1 << (Integer.SIZE - 1);

    // TODO(herhut): Maybe cache seenPositions for target classes.
    private final Map<DexString, Int2IntMap> seenPositions = new IdentityHashMap<>();
    private final Reference2IntMap<DexProto> targetProtoCache;
    private final Reference2IntMap<DexProto> sourceProtoCache;
    private final DexType source, target;
    private final Collection<DexMethod> invokes;
    private final Map<DexType, DexType> substituions;

    private CollisionDetector(DexType source, DexType target, Collection<DexMethod> invokes,
        Map<DexType, DexType> substitutions) {
      this.source = source;
      this.target = target;
      this.invokes = invokes;
      this.substituions = substitutions;
      this.targetProtoCache = new Reference2IntOpenHashMap<>(invokes.size() / 2);
      this.targetProtoCache.defaultReturnValue(NOT_FOUND);
      this.sourceProtoCache = new Reference2IntOpenHashMap<>(invokes.size() / 2);
      this.sourceProtoCache.defaultReturnValue(NOT_FOUND);
    }

    boolean mayCollide() {
      fillSeenPositions(invokes);
      // If the type is not used in methods at all, there cannot be any conflict.
      if (seenPositions.isEmpty()) {
        return false;
      }
      for (DexMethod method : invokes) {
        Int2IntMap positionsMap = seenPositions.get(method.name);
        if (positionsMap != null) {
          int arity = method.getArity();
          int previous = positionsMap.get(arity);
          if (previous != NOT_FOUND) {
            assert previous != 0;
            int positions = computePositionsFor(method.proto, source, sourceProtoCache,
                substituions);
            if ((positions & previous) != 0) {
              return true;
            }
          }
        }
      }
      return false;
    }

    private void fillSeenPositions(Collection<DexMethod> invokes) {
      for (DexMethod method : invokes) {
        DexType[] parameters = method.proto.parameters.values;
        int arity = parameters.length;
        int positions = computePositionsFor(method.proto, target, targetProtoCache, substituions);
        if (positions != 0) {
          Int2IntMap positionsMap =
              seenPositions.computeIfAbsent(method.name, k -> {
                Int2IntMap result = new Int2IntOpenHashMap();
                result.defaultReturnValue(NOT_FOUND);
                return result;
              });
          int value = 0;
          int previous = positionsMap.get(arity);
          if (previous != NOT_FOUND) {
            value = previous;
          }
          value |= positions;
          positionsMap.put(arity, value);
        }
      }

    }

    private int computePositionsFor(DexProto proto, DexType type,
        Reference2IntMap<DexProto> cache, Map<DexType, DexType> substitutions) {
      int result = cache.getInt(proto);
      if (result != NOT_FOUND) {
        return result;
      }
      result = 0;
      int bitsUsed = 0;
      int accumulator = 0;
      for (DexType aType : proto.parameters.values) {
        if (substitutions != null) {
          // Substitute the type with the already merged class to estimate what it will
          // look like.
          while (substitutions.containsKey(aType)) {
            aType = substitutions.get(aType);
          }
        }
        accumulator <<= 1;
        bitsUsed++;
        if (aType == type) {
          accumulator |= 1;
        }
        // Handle overflow on 31 bit boundary.
        if (bitsUsed == Integer.SIZE - 1) {
          result |= accumulator;
          accumulator = 0;
          bitsUsed = 0;
        }
      }
      // We also take the return type into account for potential conflicts.
      DexType returnType = proto.returnType;
      if (substitutions != null) {
        while (substitutions.containsKey(returnType)) {
          returnType = substitutions.get(returnType);
        }
      }
      accumulator <<= 1;
      if (returnType == type) {
        accumulator |= 1;
      }
      result |= accumulator;
      cache.put(proto, result);
      return result;
    }
  }

  public Collection<DexType> getRemovedClasses() {
    return Collections.unmodifiableCollection(mergedClasses.keySet());
  }
}