Make java check after golem file linking

Otherwise we don't yet have the files linked in

Change-Id: I66fdae68123680dcb88f1e91675aecb88df6c8ca
diff --git a/tools/run_on_app.py b/tools/run_on_app.py
index b404dd3..2adabef 100755
--- a/tools/run_on_app.py
+++ b/tools/run_on_app.py
@@ -217,9 +217,6 @@
 
 def main(argv):
   (options, args) = ParseOptions(argv)
-  if not options.ignore_java_version:
-    utils.check_java_version()
-
   if options.run_all:
     return run_all(options, args)
   if options.find_min_xmx:
@@ -236,6 +233,9 @@
   if options.golem:
     golem.link_third_party()
     options.out = os.getcwd()
+  if not options.ignore_java_version:
+    utils.check_java_version()
+
   outdir = options.out
   data = None
   if options.app == 'gmscore':